Ilovememphis

I had a lot of great experiences during my first year of university, even in my introductory biology classes.

For example, I can remember listening to Dr. Steven Newmaster, a taxonomist who was hooked on plants, recount a story about going to a hardware store to buy wood for a remodeling project for his house. The salesperson who was helping him assured Dr. Newmaster that all the wood this well-known hardware store chain was selling was ethical, meaning that it was devoid of any endangered species of trees.

Doubtful, he took a sample of the wood he wanted to purchase back to his lab to analyze it. Sure enough, it came from an endangered species.

Dr. Newmaster deplored living in a world where it was impossible to easily verify the claims made by supposedly ethical companies like this hardware store. He told us of how he dreamed of a day when anyone would be able to bring a portable DNA barcode scanner into a store, allowing them to identify any species, plant or animal, within minutes.

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Today, I spent most of the day on a train to Montreal, giving me lots of time to write this post.  Being home for the holidays is always a joyful event, and this year will be no exception.

Fall semester finals are over and, although I will have to work on my thesis and finish my grad school applications over the Christmas break, I feel free and calm. I can’t wait to spend some time with my loved ones.

Unfortunately, I wasn’t able to follow the goings-on in science as much as I usually do this week because I spent most of my time studying. That was somewhat of a blessing though because I got to spend the entire train ride catching up on my science news. For instance, although I followed the Higgs boson drama as it unfolded on December 13th through my highly geeky twitter feed, I hadn’t had a chance to explore all the wonderful blog posts penned by my favorite science writers on the subject until now.

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copyright harry.mackenzie

Finals are upon us! Students everywhere are flocking to the libraries and coffee shops at all hours of the day in order to “study” – code for checking their Facebook and twitter accounts  in between every single lecture Powerpoint slide.

The most popular mixes in 8tracks go from being called “dupstep dance party” to being called “holiday study mix”, “anti-procrastination mix”, and “music to cram to”. The gym empties out and students become uncharacteristically clean tenants because cleaning their apartments seems like the only justifiable excuse for not studying. Can you hear the book spines cracking?

You know what else happens during finals? – I stop blogging for a few days. I’ve been enjoying myself immensely on Salamander Hours these past few weeks but I must take my leave until next Saturday to concentrate on my studies. I hope you all have a wonderful week!

In 1987, the Discovery Channel aired its now famous weeklong series Shark Week for the first time. It quickly grew in popularity and by 1995 it was pulling in over 20 million viewers. It has consistently garnered high levels of attention ever since, and in 2008, it hit its highest numbers yet, with 29 million viewers tuning in. It has become such a powerhouse in Summer programming, the series usually airs at the end of July, that celebrities like supermodel Heidi Klum and the Late Late Show’s Graig Ferguson have deemed it worthy of their participation (and vice versa).

The question as to why people are fascinated by sharks is not new. I could philosophize about our society’s need to fabricate thrill and excitement, fueling our captivation for these amazing predators in much the same way as the slew of mediocre horror movies constantly in production or amusement park roller coasters do. I could also attribute our fascination to the shark’s oceanic habitat (except for those pesky freshwater sharks of course), which we will never be able to fully appropriate. We may be able to destroy it, but having that kind of power over something or someone can never signify ownership, no matter how hard humans have tried to prove otherwise.

I could go on and on about the sometimes absurd reasons for the shark’s popularity, but, in truth, I am just as enraptured by these animals as the next person. I can remember begging my father as a child to buy me a brand of breakfast cereal I never would have wanted otherwise, simply to get the pair of Shark Week 3D glasses contained inside.

I still find sharks, skates and rays (Elasmobranchii) fascinating. Being a zoology student, it is possible that I might find them more beautiful and elegant than the average student. That being said, the marine and freshwater biology students at the university easily surpass me in their reverent love for sharks and student Samantha Sherman clearly epitomizes this.

Sam is currently writing her undergraduate thesis on the brownbanded bamboo shark (Chiloscyllium punctatum). It is entitled “Ontogeny of methylamine production in the brownbranded bamboo shark“.

A few weeks ago, during a rather hilarious conversation among a few exhausted biology students in need of a study break, she mentioned that she needed volunteers to aid her in sample collection. More than happy to lend a hand and experience something new in the process, I volunteered to help her, and on Wednesday, November 16th, I got to do just that.

Adult brownbanded bamboo shark

The sharks she works with are juveniles, which can easily be distinguished by their adult counterparts thanks to their dark gray and white banding patterns. The adults, measuring up to 1 meter in size, are brownish in colour. They are found in the Indo-West Pacific.

 

This is one of the sharks Samantha works with. It is a 1-month-old male bamboo shark. In the aqualab, they are feed shrimp but they will also feed on scallops, squid and small fish in the wild. I loved being able to touch this little guy’s rough skin.

juvenile brownbanded bamboo shark

I was most interested by the shark eggs, however, because I had never seen one before. If you look closely, you will see the banded shark embryo inside. According to Sam, this one was a few hours away from hatching. You can tell because of its very small yolk sac, which provides nutrients while in the egg.

brownbanded bamboo shark egg

Seeing Sam in action was definitely a treat. She has worked extensively with sharks over the last few years and has accumulated a rather impressive amount of knowledge about these animals in the process. I hope to interview her next semester about the work she performed for her thesis and her previous experiences with sharks, so stay tuned!

Salamander News

I am happy to report that there have been no further casualties since we lost salamander #80 a few weeks ago. When I cleaned their cages on Friday morning, all the salamanders looked healthy and active.

I am not quite done with my first experiment, but for strategic reasons, I have started the second. My second experiment examines whether visual or olfactory cues contain information about the sex of salamanders of the same species. I am running two treatments. The first consists of a video of a male salamander combined with female olfactory cues and the second consists of the same video combined with male olfactory cues. I expect to see significantly more aggressive behaviours in male salamanders undergoing the second treatment.

On Tuesday night, I ran my first trials with female olfactory cues and the salamanders reacted quite differently than they usually do when confronted with male cues. They were much calmer and less aggressive. I could tell because they were walking much more slowly, they were less active and they displayed less aggressive behaviours, such as looking curving their backs, much like a cat would, to increase their physical presence.

Given that I have only run 9 trials out of the 80 trials that I must complete for this experiment, I cannot conclude anything at this point, but these initial results seem to correspond to my predictions, which is rather exciting!

Salamander! Salamander! – A musical rendition

Axolotls are an interesting type of salamander for a number of reasons. Chiefly, these unique amphibians undergo neotony, which means that they remain in larval form throughout the entirety of their lives. It is for this reason that their gills remain outside of their bodies instead of being resorbed during metamorphosis as is the case for many of their salamander relatives. This limits axolotl to a completely aquatic lifestyle because its gills would collapse in air.

I stumbled across this video on Thursday. When I watched it for the first time, it really cracked me up. I must warn you, however, that it has absolutely no very little scientific merit. Enjoy!

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We are now halfway through the Fall semester. The inevitably of midterms being unleashed onto the undergraduate population can no longer be ignored. If you are anything like me, you are probably feeling nostalgic about the peaceful library you had the privilege of enjoying all by your lonesome in the first weeks of September, where finding a quiet seat near a plug for your computer did not mean having to plan an overnight stake-out or resorting to bribery  (“Baked goods for anyone who will give up their study cubicle!”).

Yep. The fall semester is in full swing. The leaves are turning burnt orange and cherry red. Unusually clean, dolled-up students are having their grad photos taken all over campus, all while pretending that they aren’t freezing in classic academic dress and stockings. Science graduate TAs are slowly but surely turning into lab zombies smeared in red ink from falling asleep while grading papers and running assays simultaneously.

In others words, these last couple of weeks have been business as usual and I am no exception. I’ve been writing midterms and lab reports, covering science news, and running my experiment to the best of my abilities. The salamanders seem to be reacting to both the chemical and visual cues alone, but until I compile my results, this will be hard to evaluate. I am almost halfway done with the first experiment and as soon as my midterms are over, I will start copying my data into an Excel file to see if any trends are developing. Stay tuned!

Science News Links

1. This week’s Scientifically Inclined column addressed a subject most of us have pondered but were probably too shy to ask about: The reason behind the bumps on women’s nipples. Read my article to find out more.

2. Scientists at Georgia Tech have managed to turn the iphone into a device that can figure out what words you are typing on your computer’s keyboard. This new form of spyware works by detecting the vibrations caused by stroking pairs of keys when it is placed on a table next to a computer. The iphone uses probabilities to infer the words being typed and has an 80% accuracy rate. Add a little context to the equation and anyone equipped with this device could easily figure out the secret ingredient to your world-famous pound cake or, worse yet, the password to your email and banking accounts.

3. Encouraging students to work hard in school in order to get a well-paying job is killing their motivation. A new study has found that materialistic students or students who are encouraged to pursue higher education as a means of avoiding the repercussions of the current economic crisis are far less prone to work hard and to be successful in school. Want your kids to do their best? Encourage them to do what they love instead of what will allow them to pay for what they love.

4.   Why would a male millipede “sing” when its entire species can’t hear? This study hypothesizes that the millipede’s stridulations, caused by the male’s segments rubbing together, are used to convince females to uncoil when they are in defensive positions. I’ll let good old Mark “Marky Mark” Walhberg explain how these hearing-impaired females manage to perceive a male’s song.

Science Video of the Week

I got great feedback from the video I posted last week so I will do my best to incorporate a science video into this blog post every week. This highly recommended video beautifully addresses the mystery that is our inability to walk in a straight line when our vision is obstructed. Enjoy!

Yesterday, I spent one hour “Squirrel watching” outside the University library. I am happy to report that our repellent seems to be effective on some squirrels. During that hour, I observed five squirrels and two of them approached the spicy repellent soaked nuts I had laid out for them. The first squirrel cached all ten nuts. After I had replaced the nuts, another squirrel came along, took one of the nuts, licked it, and put it back in the pile! It was quite remarkable to see. I could almost see it getting hot and sweaty… Not really, but don’t you just love the imagery? Actually, the squirrel put the nut back and then went on to sniff the others. Dejected, it left the nuts behind and went looking for a more agreeable meal.

This is interesting because, so far, I have witnessed two squirrels eat or remove all ten treated nuts and I have seen one reject them. In the case where the nuts were accepted, the two squirrels were campus and arboretum squirrels respectively. The squirrel that rejected the nuts was a campus squirrel. These observations seem to refute our hypotheses, but it is much to early for me to draw any conclusions. I will have to wait to see the results gathered by my fellow group members first.

 Squirrels are fun, but where is all the science news?

This week, I wrote about the Ig Nobel prize ceremony in the Ontarion. The Ig Nobels are quirky prizes that honour research that makes you laugh and then think. If you’ve never heard of them, I recommend you read this.

Here are this week’s science links:

1. Do you ever get that dirty feeling after telling a fib? This study claims that you can wash away feelings of guilt… with soap! For example, in one experiment, participants felt less guilty about a past misdeed after washing their hands in antiseptic hand soap. In addition, when people were asked to think of themselves as “clean and fresh”, they judged others more harshly and thought of themselves as more morally sound than participants asked to think of themselves as unclean. The flip side of this is that washing one’s hands after a positive event also seems to wash the joy away. Cleansing removes the residual feelings caused by past experiences, good or bad. Those born-again Christians got it right this time, it seems.

2. This African Lizard makes classifying mammals, defined as having mammary glands and a placenta, that much harder. The lizard embryo actually implants itself into the oviduct wall of its mother and gets its nutrients directly from the mother’s blood vessels instead of yolk. The sheer number of Powerpoint slides and textbooks that will have to be edited in high-school and first-year university biology courses makes my head spin!

Image by Philip Wagner

3. I hope Steve jobs heard about this before he passed away. Researchers from the University of California have turned the iPhone into a microscope and a spectrometer. This would enable small remote hospitals to take medical grade pictures and email them to labs that could assist them in diagnosing unknown illnesses. This could also be a useful and cheap way of enhancing science classes all over the world. Once again, there seems to be an app for that.

Finally, I had to write a blog post about an invertebrate I had encountered during one of my labs in my Integrative invertebrate biology course. I wrote about the Banasa stink bug – Feel free to take a look and explore the site!

That’s all for this week. Enjoy your Canadian Thanksgiving weekend, folks!

This week has been rather hectic for this 4th year student. I completed my thesis proposal draft in time to send it to my thesis advisor for his comments. I am now in the process of editing it so I can hand it in on the due date, October 7th. I also edited the videos to be used as visual cues in my experiment using Adobe Premier Pro CS3. This means that I am all set for my experiment. I plant to start running it tomorrow night.

Anytime I start something new like this, there is a certain sense of excitement and jittery anticipation. I hope everything will go smoothly. There is really no turning back now, as I must see it through and hope for the best (and hopefully significant) results.

Those were not the only things I had on my mind this weekend. I am currently enrolled in a 4th year animal behaviour course. One of the components of this class is that we must come up with and perform an original animal behaviour experiment to be presented in the form of a poster to the class at the end of the semester. My group, composed of three other girls and yours truly, have come up with the following hypotheses for an experiment on squirrels:

 The “Some Like it Hot” Hypothesis

Campus squirrels are more resistant to common squirrel repellent because they have access to campus garbage and are therefore more accustomed to eating a larger variety of foods than squirrels that live farther from these supplementary food sources.

Prediction: There will be a smaller difference in preference between treated and untreated nuts in campus squirrels, compared with arboretum squirrels.

The “Save Your Cache” Hypothesis

Squirrels from the arboretum that do not have access to garbage year-round will be more likely to cache food then squirrels on campus with access to food at all times.

Predictions: Squirrels provided food in the arboretum more frequently remove it to a secondary location than squirrels on campus whereas campus squirrels more frequently consume the food on the spot than squirrels from the arboretum.

The treated nuts (unsalted peanuts) mentioned above will be soaked in a known squirrel repellent made of onions and cayenne pepper. It has been shown that most rodents, including squirrels, are repelled by capsaicin, the molecule in cayenne pepper that makes it spicy. In order to collect our data, each one of us must spend 4 hours on campus at two separate locations and four hours in the arboretum, once again at two separate locations. In each 1-hour trial, we will lay out ten peanuts that have ether been treated with the repellent or that are untreated. We will observe how many squirrels approach the peanuts, how many eat them and how many removed them.

And so, in an effort to further science, I went out into the cold 9°C afternoon yesterday to observe squirrels in the arboretum. As it turned out, I quite enjoyed the activity. The air was cold but the sun was shining and everyone I encountered on the arboretum grounds had an incredibly cheery disposition. Nature in otherwise urban environments seems to have that effect on people. I could almost pretend that there wasn’t any major construction going on just a short walk away, where my university is building a new gym and arena.

The first two hours of observation were quite uneventful. I saw one squirrel in two whole hours and it didn’t approach the nuts I had laid out on the grass once. Worried, I moved to another location and attempted a third trial.

Success at last

After forty minutes and three squirrels that  had shown absolutely no interest in the treated nuts, a lowly black squirrel walked up to the pile of treats and had himself a feast. Yep, the arboretum squirrel sat there for 6 minutes and ate every one of the supposedly repellent nuts.

Taken at www.toledoperspectives.blogspot.com

Such is the way of science. To be honest, I would be just as happy with disproving our hypotheses. You can’t always get the results you want – but you sure can explain the ones you do get in such a way as to obtain information that is just as relevant!

 

Sunday  Squirrel Watch

This morning, I wanted to go out and observe squirrels for at least two hours but ’twas not in the cards. I woke up in a nick of time, made breakfast and walked to the bus-stop, only to realise that the street was blocked because of a breast cancer charity run (which I applaud by the way). I ran to the main bus terminal but it had been moved for the day. Amazingly, no one could tell me to where.

Considering my options, I figured my best bet was to go north to the location it had been previously moved during the Jazz fest in September. Unfortunately, the city’s transit committee does not think the way I do. They decided that it should be moved in the opposite direction, two blocks South from the main terminal. After all that, miraculously, I managed to catch the bus I had originally set out to catch – What luck!

Three minutes later, I was on the bus, witnessing the first drops of rain in what was to be a rainy day. Genuinely discouraged, I decided to take the bus back home once I arrived at the university because there was no point in laying nuts out in the rain. I would have a quiet morning at my apartment, read the newspaper and eat my now decidedly cold breakfast.

On the bus home, the rain stopped. The skies remained clear for two hours, which would have enabled me to complete the two hours of observations I had planned on doing in the first place. Clearly, Fall is upon us and it is not playing nice.